- Antelope Bitterbrush Reserve
- Appendicitis Hill Wilderness Study Area
- Bear Lake National Wildlife Refuge
- Big Jacks Creek Wilderness
- Black Butte Wilderness Study Area
- Black Canyon Wilderness Study Area (#1)
- Black Canyon Wilderness Study Area (#2)
- Boise Front Area of Critical Environmental Concern
- Borah Peak Wilderness Study Area
- Boundary-Smith Creek Wildlife Management Area
- Box Creek Wilderness Study Area
- Bruneau-Jarbidge Rivers Wilderness
- Burnt Creek Wilderness Study Area
- Camas National Wildlife Refuge
- Canfield Mountain Natural Area
- Castle Rocks State Park
- Cecil D. Andrus-White Clouds Wilderness
- Cedar Butte Wilderness Study Area
- Chief Eagle Eye Reserve
- China Cup Butte Wilderness Study Area
- City of Rocks National Reserve
- Clagstone Meadows Natural Area
- Cougar Bay Nature Preserve
- Craters of the Moon National Monument
- Craters of the Moon National Preserve
- Craters of the Moon Wilderness
- Crystal Lake Wilderness Study Area
- Deer Creek Wilderness Study Area
- Deer Flat National Wildlife Refuge
- Eagle Fish Hatchery | Idaho Fish and Game
- Eagle Island State Park
- Eighteenmile Wilderness Study Area
- English Point Recreation Trails
- Farnham Forest Research Natural Area
- Farragut State Park
- Fernan Lake Natural Area
- Five Lakes Butte Research Natural Area
- Foothills East Reserve
- Frank Church-River of No Return Wilderness
- Friedman Creek Wilderness Study Area
- Gamlin Lake Recreation Site
- Golda Harris Nature Preserve
- Goldburg Wilderness Study Area
- Gooding City of Rocks East Wilderness Study Area
- Gooding City of Rocks West Wilderness Study Area
- Gospel-Hump Wilderness
- Grandmother Mountain Wilderness Study Area
- Grays Lake National Wildlife Refuge
- Great Rift Wilderness Study Area
- Hagerman Fossil Beds National Monument
- Hawkins Range Reserve
- Hawley Mountain Wilderness Study Area
- Hells Gate Habitat Management Unit
- Hells Half Acre Wilderness Study Area
- Hemingway-Boulders Wilderness
- Hemingway/Northwood Natural Area
- Henrys Lake Wilderness Study Area
- Heyburn State Park
- Hillside to Hollow Reserve
- Hobo Cedar Grove Botanical Area
- Hubbard Reservoir Recreation Area
- Hulls Gulch Area of Critical Environmental Concern
- Hulls Gulch Reserve
- Hyatt Hidden Lakes Reserve
- Idler's Rest Nature Preserve
- Jim McClure-Jerry Peak Wilderness
- King Hill Creek Wilderness Study Area
- Kootenai National Wildlife Refuge
- Lapwai State Game Farm
- Lava Wilderness Study Area
- Little City of Rocks Wilderness Study Area
- Little Granite Research Natural Area
- Little Jacks Creek Wilderness
- Little Wood River Wilderness Study Area
- Lower Salmon Falls Creek Wilderness Study Area
- Lucky Peak State Recreation Area
- Marshall Mountain Wilderness Study Area
- McCroskey State Park
- Mesa Reserve
- Middle Fork Clearwater Wild And Scenic River
- Middle Fork Salmon Wild And Scenic River
- Military Reserve
- Minidoka National Historic Site
- Minidoka National Wildlife Refuge
- Montpelier Wildlife Management Area
- Moose Meadow Creek Research Natural Area
- Morley Nelson Snake River Birds of Prey National Conservation Area
- Mowry State Park
- No Business Creek Research Natural Area
- Noble Reserve
- North End Native Plant Preserve
- North Fork Owyhee Wilderness
- O'Hara Creek Research Natural Area
- Oregon Trail Reserve
- Owyhee River Wilderness
- Oxford Slough Waterfowl Production Area
- Peace Valley Overlook Reserve
- Pend Oreille Wildlife Management Area
- Petticoat Peak Wilderness Study Area
- Pole Creek Wilderness
- Polecat Gulch Reserve
- Post Falls Community Forest
- Priest Lake Memory Gardens
- Pulaski Tunnel Area of Critical Environmental Concern
- Rapid River Wild And Scenic River
- Rathdrum Mountain Park
- Ravens Eye Wilderness Study Area
- Round Lake State Park
- Saint Joe Wild and Scenic River
- Salmon Wild And Scenic River
- Sand Butte Wilderness Study Area
- Sand Mountain Wilderness Study Area
- Sawtooth National Recreation Area
- Sawtooth Wilderness
- Selkirk Crest Wilderness Study Area
- Selway-Bitterroot Wilderness
- Settlers Grove of Ancient Cedars Botanical Area
- Shale Butte Wilderness Study Area
- Shoshone Wilderness Study Area
- Sneakfoot Meadows Research Natural Area
- Snow Peak Wildlife Management Area
- Snowhole Rapids Wilderness Study Area
- Square Mountain Research Natural Area
- Stack Rock Reserve
- Tubbs Hill Natural Area
- Upper Newsome Creek Research Natural Area
- Upper Priest Lake Scenic Area
- White Knob Mountains Wilderness Study Area
- Wilson Springs
- Winchester Lake State Park